GitHub Copilot Customization Explained for Beginners: Instructions, Prompt Files, Skills, Agents, and Hooks 

Introduction

If you've recently started using GitHub Copilot, you've probably come across terms like Instructions, Prompt Files, Skills, Agents, and Hooks. At first glance, they all seem to do the same thing—they tell Copilot what to do.

So why does GitHub have five different customization features?

The answer is simple: each feature solves a different problem.

Think of GitHub Copilot as a new developer joining your team. On their first day, you don't just hand them code. You explain your coding standards, give them reusable templates, teach them specialized knowledge, assign them a role, and automate repetitive tasks.

That's exactly how GitHub Copilot customization works.

In this article, you'll learn what each feature does, when to use it, and how they all work together. By the end, you'll know which feature to start with and which ones can wait until you're more experienced.


Why GitHub Copilot Needs Customization

Out of the box, GitHub Copilot is trained on a vast amount of public code and documentation. That makes it a great general-purpose coding assistant, but it doesn't know anything about your project.

For example, it doesn't automatically know:

  • Your coding standards

  • Your preferred architecture

  • Your naming conventions

  • Your deployment process

  • Your company guidelines

  • Your testing framework

Customization bridges that gap by giving Copilot context about your project.

Instead of repeating the same instructions in every chat, you teach Copilot once and let it remember.


Understanding the Big Picture

The easiest way to understand GitHub Copilot customization is to compare it to a software development team.

GitHub Copilot FeatureReal-Life Analogy
InstructionsCompany policies
Prompt FilesReusable templates
SkillsTechnical expertise
AgentsSpecialized employees
HooksAutomation scripts

Each feature builds on the previous one.

Let's look at them one by one.


1. Custom Instructions

What Are Instructions?

Instructions are project-wide rules that GitHub Copilot automatically follows every time it generates code or answers questions.

Think of them as your team's coding standards.

Instead of repeatedly saying:

  • Use Java 21

  • Use Spring Boot 3

  • Write JUnit 5 tests

  • Use constructor injection

  • Follow REST API naming conventions

you define these rules once.

Whenever Copilot works inside your repository, those rules are already available.


Where Are Instructions Stored?

Typically, you'll create:

.github/
└── copilot-instructions.md

You can also create additional instruction files for specific folders if different parts of your project follow different conventions.


Example

Suppose every Spring Boot project in your company follows these standards.

# GitHub Copilot Instructions

Always:

- Use Java 21
- Use constructor injection
- Use Lombok
- Use JUnit 5
- Follow REST naming standards
- Add JavaDoc to public methods

Now when you ask: Create a REST Controller

Copilot already knows your preferred coding style.

No need to explain it every time.


When Should You Use Instructions?

Instructions are perfect for information that rarely changes.

Examples include:

  • Coding standards

  • Naming conventions

  • Project architecture

  • Framework versions

  • Documentation style

  • Testing strategy

Think of Instructions as permanent project rules.


2. Prompt Files

What Are Prompt Files?

Prompt Files are reusable prompts that you can run whenever you need them.

Unlike Instructions, they are not loaded automatically.

Instead, you choose them for a specific task.


Why Use Prompt Files?

Imagine that every Friday you generate API documentation.

Each time, you write:

  • Generate Swagger documentation

  • Create examples

  • Explain endpoints

  • Include request and response payloads

That's repetitive.

Instead, save that prompt once.


Folder Structure

.github/
└── prompts/
    ├── generate-api.prompt.md
    ├── code-review.prompt.md
    └── security-review.prompt.md

Example Prompt File

Generate a complete Spring Boot REST API.

Requirements:

- DTOs
- Validation
- Swagger
- Unit Tests
- Exception Handling
- Service Layer
- Repository Layer

Next time, instead of writing a long prompt, simply reference the prompt file.


Best Use Cases

Prompt Files work well for repetitive activities such as:

  • API generation

  • Code reviews

  • README creation

  • Test generation

  • Documentation

  • Database migrations

Think of Prompt Files as reusable templates.


3. Skills

Now we move beyond prompts.

Skills teach Copilot how to perform specialized tasks.


What Is a Skill?

A Skill is a collection of knowledge focused on one specific area.

It can contain:

  • Documentation

  • Examples

  • Scripts

  • Best practices

  • Reference material

The important part is that Copilot loads a Skill only when it's relevant.


Folder Structure

.github/
└── skills/
    └── kubernetes/
        ├── SKILL.md
        ├── examples/
        └── scripts/

Example

Suppose your team deploys applications to Kubernetes.

Your Skill could include:

  • Deployment process

  • Rollback procedure

  • Troubleshooting guide

  • kubectl examples

  • Helm commands

Now if you ask: Deploy the application to Kubernetes

Copilot automatically uses that specialized knowledge.


Instructions vs Skills

Many beginners confuse these two.

The difference is simple.

Instructions are always loaded.

Skills are loaded only when necessary.

If every request should follow a rule, use Instructions.

If only Kubernetes questions need Kubernetes knowledge, create a Skill.


4. Agents

Imagine your development team.

One developer focuses on security.

Another writes documentation.

Another reviews pull requests.

GitHub Copilot can work the same way.


What Is an Agent?

An Agent is a specialized AI assistant designed for a particular responsibility.

Instead of one general-purpose Copilot, you can have multiple experts.

Examples include:

  • Security Agent

  • Documentation Agent

  • Backend Agent

  • Frontend Agent

  • Database Agent

  • DevOps Agent

Each agent has its own instructions, tools, permissions, and context.


Example

Suppose you ask:  Review my authentication code.

If you use a Security Agent, it already understands secure coding practices and focuses on vulnerabilities.

If you switch to a Documentation Agent, it explains the code and generates documentation instead.

Same code.

Different expertise.


When Should Beginners Use Agents?

Agents become valuable when:

  • Working in large teams

  • Managing enterprise projects

  • Handling specialized responsibilities

  • Using GitHub Copilot Agent Mode

For small personal projects, Instructions and Prompt Files are usually enough.


5. Hooks

Hooks are different from every feature we've discussed.

They don't provide instructions.

They perform actions automatically.


What Is a Hook?

A Hook runs commands during an Agent workflow.

Instead of reminding Copilot to perform repetitive tasks, Hooks do them automatically.


Example

Imagine every code change should be formatted.

Without Hooks:

Generate code.

Run formatter.

Run tests.

Fix issues.

Commit changes.

With Hooks:

Generate code.

Hook automatically formats the project.

Hook runs unit tests.

Hook validates the build.

Everything happens without manual intervention.


Common Hook Examples

  • Run unit tests

  • Execute Maven build

  • Run ESLint

  • Check formatting

  • Validate Terraform

  • Scan for secrets

  • Run security checks

Hooks are ideal for repetitive automation.


How All These Features Work Together

Let's see a complete workflow.

Imagine you're building a Spring Boot application.

Step 1

Instructions tell Copilot:

  • Use Java 21

  • Use Spring Boot 3

  • Follow REST standards


Step 2

You choose the Backend Agent.

Now Copilot behaves like a backend developer.


Step 3

You use a Prompt File.

It tells Copilot:

Generate a CRUD API with validation and Swagger.


Step 4

Copilot realizes Kubernetes deployment is involved.

It automatically loads the Kubernetes Skill.


Step 5

After generating the code, a Hook runs.

It automatically:

  • Formats the project

  • Executes tests

  • Builds the application

You didn't need to ask for any of these steps.


Which Feature Should Beginners Learn First?

Here's the learning path I recommend.

1. Instructions

Start here.

They improve every Copilot interaction.


2. Prompt Files 

The easiest productivity improvement.

Perfect for repetitive work.


3. Skills

Learn Skills once you're working on medium or large projects.


4. Agents

Useful when your workflow becomes more specialized.


5. Hooks

Learn Hooks after becoming comfortable with Agent Mode and automation.


Common Beginner Mistakes

Mistake 1

Putting everything inside Instructions.

Instructions should remain short and contain only project-wide rules.


Mistake 2

Creating Prompt Files for information that never changes.

That's what Instructions are for.


Mistake 3

Using Skills for simple prompts.

Skills should contain specialized knowledge rather than one-off prompts.


Mistake 4

Creating too many Agents.

Start with one or two specialized agents before expanding.


Mistake 5

Ignoring Hooks.

If you repeatedly run the same commands after generating code, Hooks can save significant time.


Quick Cheat Sheet

Feature
Best For
Instructions
Project standards
Prompt Files
Reusable prompts
Skills
Specialized expertise
Agents
Different AI roles
Hooks
Workflow automation

Conclusion

GitHub Copilot has evolved into much more than an autocomplete tool. With the right customization, it becomes a teammate that understands your project's standards, performs repetitive tasks, applies specialized knowledge, and even automates parts of your development workflow.

If you're just starting out, don't try to learn everything at once. Begin with Custom Instructions to teach Copilot your project's coding standards. Next, create Prompt Files for the tasks you perform repeatedly. As your projects grow, explore Skills for domain-specific expertise, Agents for role-based assistance, and Hooks to automate routine workflows.

Have you started customizing GitHub Copilot yet? Share your experience or your favorite workflow in the comments below!

Comments

Popular posts from this blog

Tidy up - Unused Project and Nuget package reference using Visual Studio 2019

Azure Front Door vs Azure Traffic Manager?

Authenticate Azure Functions - API Keys